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I have two data frames df1 and df2, where df2 is a subset of df1. How do I get a new data frame (df3) which is the difference between the two data frames?

In other word, a data frame that has all the rows/columns in df1 that are not in df2?

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2 Answers

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by (36.8k points)

You can use drop_duplicates

pd.concat([df1,df2]).drop_duplicates(keep=False)

The above code is used only on the data frame which has no duplicates For example:

df1=pd.DataFrame({'A':[1,2,3,3],'B':[2,3,4,4]})

df2=pd.DataFrame({'A':[1],'B':[2]})

Wrong Output :

pd.concat([df1, df2]).drop_duplicates(keep=False)

Out[655]: 

   A  B

1  2  3

Correct Output

Out[656]: 

   A  B

1  2  3

2  3  4

3  3  4

There are 2 methods to achieve it:

Method 1: using isin  in the tuple

df1[~df1.apply(tuple,1).isin(df2.apply(tuple,1))]

Out[657]: 

   A  B

1  2  3

2  3  4

3  3  4

Method 2: Then merge with indicator

df1.merge(df2,indicator = True, how='left').loc[lambda x : x['_merge']!='both']

Out[421]: 

   A  B     _merge

1  2  3  left_only

2  3  4  left_only

3  3  4  left_only

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