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I'm looking for information on how should a Python Machine Learning project be organized. For Python usual projects there is Cookiecutter and for R ProjectTemplate.

This is my current folder structure, but I'm mixing Jupyter Notebooks with actual Python code and it does not seems very clear.

.

├── cache

├── data

├── my_module

├── logs

├── notebooks

├── scripts

├── snippets

└── tools

I work in the scripts folder and currently adding all the functions in files under my_module, but that leads to errors loading data(relative/absolute paths) and other problems.

I could not find proper best practices or good examples on this topic besides this  kaggle competition solution  and some Notebooks that have all the functions condensed at the start of such Notebook.

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by (38.2k points)
edited by

Here, you can append to the system path which is the most efficient and cleanest way of importing code into a notebook without lots of module boilerplate and a pip -e install.

 Also, you should use the %autoreload and %aimport, magics with the above as shown in the code below.

 # Load the "autoreload" extension

%load_ext autoreload

 

# always reload modules marked with "%aimport"

%autoreload 1

 

import os

import sys

# add the 'src' directory as one where we can import modules

src_dir = os.path.join(os.getcwd(), os.pardir, 'src')

sys.path.append(src_dir)

# import my method from the source code

%aimport preprocess.build_features

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